PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_12400V3.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 408aa    MW: 42404.8 Da    PI: 8.894
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_12400V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.99.8e-103959727
                        SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  7 rffartGtCkyGdrCkFaHgp 27
                        +++++tGtCk+G++Ck++H++
  Pp3c26_12400V3.2.p 39 QYYLKTGTCKFGATCKYHHPR 59
                        59*****************96 PP

2zf-CCCH39.78.4e-1381105327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C +++rtG CkyG +CkF+H++
  Pp3c26_12400V3.2.p  81 EKECAYYMRTGSCKYGVTCKFHHPQ 105
                         689********************97 PP

3zf-CCCH37.24.9e-12237262227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+++++tG+Ck+G +C+++H++
  Pp3c26_12400V3.2.p 237 GQPECQYYMKTGECKFGTTCRYHHPK 262
                         5799********************96 PP

4zf-CCCH34.63.2e-11283307226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         + ++C+f+ r+G+Ck+G++CkF H+
  Pp3c26_12400V3.2.p 283 GNPPCSFYTRYGICKFGPTCKFDHP 307
                         669*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.823759IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-73959IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.7093960IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-578105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.69578106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-679106IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-1081105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-584104IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5235262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906235263IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9238262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6239263IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4241261IPR000571Zinc finger, CCCH-type
PROSITE profile